| 1st Qualifying Round | 2nd Qualifying Round | 3rd Qualifying Round | Playoffs | League Phase | Knockout |
| Round of 16 | Quarterfinals |
Round:
Played
1st Round
07/09/2024 - Tuesday
11:30
Panevėžys
3
x
0
HJK Helsinki
12:45
Ħamrun Spartans
0
x
1
Lincoln Red Imps
14:00
The New Saints
3
x
0
Dečić
14:00
UE Santa Coloma
1
x
2
Ballkani
14:45
Víkingur Reykjavik
0
x
0
Shamrock Rovers
15:00
AC Virtus
1
x
7
Steaua Bucureşti
07/10/2024 - Wednesday
11:00
Ordabasy
0
x
0
Petrocub Hîncești
12:00
Flora
0
x
5
Celje
13:00
RFS
3
x
0
Larne
13:00
Slovan Bratislava
4
x
2
Struga
14:00
KÍ Klaksvík
2
x
0
Differdange 03
14:00
Ludogorets Razgrad
3
x
1
Dinamo Batumi
14:45
Dinamo Minsk
0
x
0
Pyunik
15:00
Borac Banja Luka
1
x
0
Egnatia Rrogozhinë
2nd Round
07/16/2024 - Tuesday
10:30
Ballkani
1
Pen
2*
UE Santa Coloma
12:00
HJK Helsinki
1
x
1
Panevėžys
12:00
Lincoln Red Imps
*0
Pen
1
Ħamrun Spartans
12:00
Pyunik
0
x
1
Dinamo Minsk
13:00
Celje
2
x
1
Flora
13:30
Steaua Bucureşti
4
x
0
AC Virtus
15:00
Dečić
1
x
1
The New Saints
15:00
Shamrock Rovers
2
x
1
Víkingur Reykjavik
07/17/2024 - Wednesday
11:00
Struga
1
x
2
Slovan Bratislava
13:00
Differdange 03
0
x
0
KÍ Klaksvík
13:00
Dinamo Batumi
1
x
0
Ludogorets Razgrad
13:00
Petrocub Hîncești
1
x
0
Ordabasy
15:00
Egnatia Rrogozhinë
2
Pen
1*
Borac Banja Luka
15:00
Larne
0
x
4
RFS